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SRX13150168: GSM5692593: wtglu30min+A 3; Cryptococcus neoformans var. grubii H99; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 7.5M spots, 2.3G bases, 910.6Mb downloads

Submitted by: NCBI (GEO)
Study: Brain glucose induces tolerance of Cryptococcus neoformans to amphotericin B during meningitis
show Abstracthide Abstract
In bacteria, antibiotic tolerance, the ability of a susceptible population to survive high doses of cidal drugs, has been shown to compromise therapeutic outcomes. In comparison, whether fungicide tolerance can be induced by host-derived factors during fungal diseases remains unproven. Here, through a systematic evaluation of metabolite-drug-fungal interactions in the leading fungal meningitis pathogen, Cryptococcus neoformans, we found that glucose, on which the brain depends for fuel, induces fungal tolerance to amphotericin B (AmB) in mouse brain tissue and patient cerebrospinal fluid via the fungal glucose repression activator Mig1. To explore the mechanisms underlying glucose-dependent AmB tolerance mediated by Mig1, we used time-series RNA-seq to evaluate dynamic gene expression in wildtype and mig1? fungi after exposure to AmB under both drug-tolerant (glucose) or drug-sensitive (galactose) conditions. Overall design: 24 samples contain wild type, mig1?, three replicates
Sample: wtglu30min+A 3
SAMN23203504 • SRS11082485 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Frozen pellets were ground in liquid nitrogen and total RNA was purified using the Ultrapure RNA Kit (Kangweishiji, CW0581S) according to the manufacturer's instructions, and then reverse-transcribed with the Fastquant RT Kit (Tiangen KR106-02, with gDNase). Illumina cDNA libraries were generated using VAHTSTM mRNA-seq v2 Library Prep Kit (Vazyme Biotech Co., Ltd, Nanjing, China) as described by the manufacture. Samples were clustered using VAHRS RNA adapters set1/set2 and then sequenced using Illunima Hiseq 4000 platform in a 2x150 pair-ended manner.
Experiment attributes:
GEO Accession: GSM5692593
Links:
Runs: 1 run, 7.5M spots, 2.3G bases, 910.6Mb
Run# of Spots# of BasesSizePublished
SRR169586007,507,2542.3G910.6Mb2023-11-08

ID:
17940791

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